Jia Nie, PhD
Assistant Professor/Research
Personal Statement:
Our research goal is to identify novel therapeutic approaches for geriatric patients. To achieve this, we generate “big data” from human samples to construct a molecular map and demonstrate the potential targets in animal models. I had my PhD in molecular biology and later finished the Biomedical Data Science Certificate program at UT Health. My training experience has led me to carry out multidisciplinary research projects. Our area of interest will be applying machine learning techniques in single-cell/nuclei datasets, decoding cell populations through signaling dynamics, and systematically exploring molecular and physiological mechanisms.
Education
Year | Degree | Discipline | Institution |
2005 | BS | Biotechnology | Nanchang University Nanchang, Jiangxi, China |
2008 | MS | Biochemistry | Nanjing Medical University Nanjing, Jiangsu, China |
2012 | PhD | Biochemistry and Molecular Biology | Nanjing Medical University Nanjing, Jiangsu, China* |
2022 | Certificate | Certificate in Biomedical Data Science | The University of Texas Health Science Center at San Antonio San Antonio, TX, USA |
*Degree was awarded in China, but the thesis research work was completed at Pennsylvania State University Milton S. Hershey Medical Center, Hershey, Pennsylvania, USA.
Research
Identify Molecular Mechanisms in Aged Mouse Pancreatic Islets
An estimated 33.9% of U.S. adults had prediabetes in 2015, and nearly half (48.3%) of adults aged 65 years or older had prediabetes. Age is the main risk factor for the disease. The progressive deterioration of glucose tolerance from normal glucose tolerance (NGT) to impaired glucose tolerance, then to prediabetes and type 2 diabetes (T2D), will last several years. The acute insulin responses from pancreatic islet and insulin resistance are the primary determinants of glucose tolerance status over time. One of the hypotheses that links T2D with islet beta-cell mass is an initial proliferative expansion of beta-cell mass in the prediabetic state, followed by increased rates of beta-cell death after the onset of obesity. However, due to the limitations of postmortem studies performed after the onset of diabetes, the increased beta-cell mass required to maintain NGT in the early stages of T2D would not be detectable in humans and the molecular mechanism during this period remains unclear.
To better understand the cell heterogeneity within the aged islet, we applied single-cell RNA-Seq and single-cell western blot experiments in mouse islets of different ages and compared the transcriptional profile during aging. We further assessed the metabolic impact of long-term administration of a high-fat diet (HFD) to young and aged mice. We measure insulin secretion dynamics by the islet perifusion assay, use the microscopy method for cell morphology analysis, perform fluorescent staining for cell markers, and construct the in vivo mouse models for physiological and pathophysiological phenomena. We also further test our hypothesis in the common marmoset (Callithrix jacchus) by examining beta-cell dysfunction, glucose intolerance, and insulin sensitivity.
Single-Nucleus RNA Profiling of Human Adipose Tissues to Identify Cell Communication During Aging
White adipose tissue (WAT) is an extremely flexible organ with a remarkable ability to adapt to changes throughout the human lifespan. With aging and obesity, adipose tissue undergoes significant changes in abundance, distribution, cellular composition, and endocrine signaling. It plays a central role in developing insulin resistance, metabolic dysfunction, inflammation, and impaired regenerative capacity. Importantly, the subcutaneous and visceral adipose depots differ in their effects on metabolism. While visceral adipose tissue (VAT) is associated with pathological conditions, such as insulin resistance and cardiovascular diseases, subcutaneous adipose tissue (SAT) is protective against these diseases in humans. Loss of SAT is a common feature with advancing age in both mice and humans. Thus, a comprehensive insight into the cell composition changes in SAT during aging is critical for understanding the cellular and molecular mechanisms driving SAT plasticity and the associated comorbidities.
Here, we applied single-nucleus RNA-sequencing (snRNA-seq) to obtain cell-type-resolved insight into the transcriptional reprogramming and tissue remodeling of human SAT, samples across middle (40–65 years of age) to older (> 65 years of age) group. Using bioinformatics tools, we found new adipocyte subpopulations with distinct functions and constructed an in vivo adipogenesis trajectory in human SAT that covers a full transition path from adipocyte progenitors to mature adipocytes. We investigate the communication between different cell types by ex-vivo cell culture experiment and spatial transcriptomics method.
Awards & Accomplishments
2010 | Best Poster Award in the 7th Diabetes and Obesity Research Symposium Pennsylvania State University Hershey Medical Center, Hershey, PA |
2011 | Career Award in the 4th Scientific Symposium of the Chinese American Diabetes Association (CADA) San Diego, CA |
2012 | First Place for Best Oral Presentation and Travel Award in the 5th Annual Conference of Midwest Islet Cell Club University of Pittsburgh, PA |
2014 | Excellent Doctoral Dissertation of Nanjing Medical University Nanjing Medical University, China |
2015 | Outstanding Ph.D. Student Award of Jiangsu Province Education Department of Jiangsu Province, China |
2016 | Postdoctoral Fellowships, T32 Biology of Aging Training Grant UT Health San Antonio, San Antonio, TX |
2017 | 2016 Annual Outstanding Achievement Award for Scientific Research in Science and Technology Ministry of Education, China |
2017 | The 2nd Prize for Science and Innovation Award of Jiangsu Province in China |
2018 | Keystone Symposia Scholarship for Frontiers in Islet Biology and Diabetes, Feb 4 - Feb 8, 2018 Keystone Resort in Keystone, Colorado |
2018 | Selected Oral Presentation at the American Diabetes Association’s 78th Scientific Sessions, June 22-26, 2018 Orlando, Florida |
2019 | Mentored Research Career Development RL5 Scholar Program San Antonio Claude D. Pepper Older Americans Independence Center, San Antonio, Texas |
Publications
Complete List of Published Works in My Bibliography:
https://www.ncbi.nlm.nih.gov/myncbi/jia.nie.1/bibliography/public/